PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof002547 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||||||
Protein Properties | Length: 291aa MW: 32160.1 Da PI: 11.2071 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108 | 1.2e-33 | 11 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeelv yL++k+ +++l++ vi+ v d+ ++PwdLp a+e e yfFs r+ ++ +g+r++r + sgyWka gk+k+v+ + Sof002547 11 LPPGFRFHPTDEELVLLYLRRKALARPLPA-AVIPVVhDVAGLDPWDLPG---ASEGEGYFFSLRRAPATgRGSRRRR-AGSGYWKAMGKEKPVFLQcgg 105 79****************************.8899998***********3...3566889999988766624666666.699**************9887 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ lvg+k+ Lvf + + +++t W++he rl Sof002547 106 gvxckRQLLVGVKTALVFXRSEPAPSSRTGWILHELRL 143 777655556**********9999999*********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-39 | 7 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.005 | 11 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-20 | 12 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MERPAQVPAQ LPPGFRFHPT DEELVLLYLR RKALARPLPA AVIPVVHDVA GLDPWDLPGA 60 SEGEGYFFSL RRAPATGRGS RRRRAGSGYW KAMGKEKPVF LQCGGGVXCK RQLLVGVKTA 120 LVFXRSEPAP SSRTGWILHE LRLAVPRGVP XQRRKNAAXV ALINRRENGS CAXSSLKTTG 180 PEAAGRTGTQ QQTLGHXAPL RNXKPGRVGG QRNRCCLRAE SSPSAVSRVX DSSDENTKSQ 240 RRMYKIAHCP PKEACKRILI FPSFGRGPNF LDHLDMRYLH DQVKDPPKMA Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-26 | 2 | 143 | 6 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16418 | 0.0 | root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168145.1 | 7e-84 | uncharacterized protein LOC100381893 isoform 2 | ||||
Refseq | NP_001348480.1 | 4e-83 | uncharacterized protein LOC100381893 isoform 1 | ||||
TrEMBL | B6TW33 | 6e-86 | B6TW33_MAIZE; NAC domain-containing protein 18 | ||||
STRING | GRMZM2G054277_P01 | 4e-82 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 6e-24 | NAC domain containing protein 41 |