PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002485
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 295aa    MW: 32530.1 Da    PI: 9.3051
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-326133730PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-326133731PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.7e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +++++G g W+tI +          R+  ++k++w++
        Sof002485  5 KQRWTSEEEAALRAGIARHGVGKWRTILKDPEfsstlCYRSNVDLKDKWRN 55
                     79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.487161IPR017930Myb domain
SuperFamilySSF466895.1E-15260IPR009057Homeodomain-like
SMARTSM007171.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-13556IPR009057Homeodomain-like
PfamPF002497.8E-7556IPR001005SANT/Myb domain
CDDcd116602.32E-19657No hitNo description
SuperFamilySSF467853.92E-18119200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.5E-12120185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.7E-18120193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.028122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.3E-10123183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGI ARHGVGKWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVIV  60
STSSSRDKAK TAVKRARTTP KNNEHTMAIS RVTSDIDDEI VDEKPIASLP SEAKNTSXSK  120
KSHSRLDNII MEAIKNLNEP TGSHRTTIAN YIEEQYWPPS DFDHLLSAKL KDLSTSGKLI  180
KVNRKYRIAP SSPNSEGRSP KMLLLEDVQR VPVKIWSDDS RTLTRSQVDA ELARMSTMTA  240
EEASVAAAHA VAEAEAIMAE AEAAAKEAEA AKAETQAAQA FAEAAFXTLK NRNAA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464176.21e-175single myb histone 6
RefseqXP_021306448.11e-175single myb histone 6
RefseqXP_021306449.11e-175single myb histone 6
SwissprotC0HIA31e-167SMH6_MAIZE; Single myb histone 6
TrEMBLA0A1B6QJ591e-173A0A1B6QJ59_SORBI; Uncharacterized protein
STRINGSb01g013670.11e-174(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-71telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]