PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002473
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 296aa    MW: 33182.4 Da    PI: 6.706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17411540PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-19956PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-07161182223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  nL+ H+r H
  Sof002473 161 FCSICGKGFKRDANLRMHMRGH 182
                6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.63E-6159184No hitNo description
SMARTSM003550.0023160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.092160187IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-6161211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SMARTSM0035571209242IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
XIRTMVDSGG QLPCHQGEIA QKQQVVNADL TCLIVQLIFT AGSLLPSLKN SSFLSHPAAG  60
HVDMANHVGP SSSLVPNAMN VSEENKEDMC TPEDYEELFK GWTDGAMEEG IEIDNVLFEE  120
QDMKDGDEGG DVGKDVENLP PGSYELLQLE KDEILAPHTH FCSICGKGFK RDANLRMHMR  180
GHGDEYKSPA ALAKPPRDAS AEHELVKRYS CPFVGCKRNK LHKNFQPLKT ILCVKNHYKR  240
SHCEKSYTCS RCHTKKFSVM AGPQEHEKHC GRDKWLCSWG TSFSRKDNFF AHLPLF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.142740.0bud| crown| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.10.0zinc finger protein STAR3
SwissprotQ943I61e-114STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A1E5VVV10.0A0A1E5VVV1_9POAL; Zinc finger protein STOP1-like protein
STRINGSi010000m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-106C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]