PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof002408

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

G2-like

Protein Properties

Length: 301aa MW: 32856.8 Da PI: 6.4277

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-17389	PU_unref	plantGDB	View CDS
PUT-157a-Saccharum_officinarum-592133726	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.7e-34	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sof002408 34 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 88 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.613	31	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-32	33	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-18	33	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-26	35	89	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-9	36	87	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-23	121	166	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
XNPNSGTHQQ QMELPGGNMG PSNGTNNNTN MAARQRLRWT NELHERFVEA VTQLGGPDRA 60 TPKGVLRIMG VQGLTIYHVK SHLQKYRLAK YIPDASTDGN KADNKDPGDL LAGLEGSSGL 120 PISEALKLQM EVQKRLHEQL EVQRQLQLRI EAQGKYLQKI IEEQQRLTGV KSETPAGGAS 180 VTVSSDQFPD SERTEPSTPA PTSESPTQVG ASNRDTGDRT EATKSTCHGD SLSRHEPLTP 240 DSNCQNGSPA ASPNHERAAK RQRGSGTEFL DSEAEFSLPR HIFESSSGSE FQQYSMSYSG 300 Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-24	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-24	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-24	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-24	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.3483	1e-139	callus\| crown\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152613.1	0.0	MYB-CC type transfactor
Refseq	XP_023156307.1	0.0	MYB-CC type transfactor isoform X1
Swissprot	Q9SJW0	3e-99	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A3L6DZW5	0.0	A0A3L6DZW5_MAIZE; Myb family transcription factor PHL7
TrEMBL	B4F7W7	0.0	B4F7W7_MAIZE; MYB-CC type transfactor
TrEMBL	K4JRK4	0.0	K4JRK4_MAIZE; G2-like transcription factor (Fragment)
STRING	GRMZM2G173943_P02	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-76	G2-like family protein