PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002382
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 303aa    MW: 32465.2 Da    PI: 10.3858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17276779PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-518133731PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.5e-07234256223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +CpdCg++F r+++L++H++  H
  Sof002382 234 PCPDCGEVFVRQESLHQHQSIrH 256
                7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-4232252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.515233261IPR007087Zinc finger, C2H2
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVEPGRSVGV REAKKSSSSS SSTAAAMVKK KLTTSKKRPE KEEKAEKKQS RQCTEPESPS  60
YRLALKSLFS CRNSHGHGQH HHARPRAQDT GSRSKRLGCS APSICKLKDD SDSRHQRVPV  120
PPPEETMGGG ASAGEPCKRR ASVSGSSERC VKKPLSEAKC GTGRSSSATA ASSNSTKQLQ  180
RGGSSLSSSS SSGGSSFRAG IQLRRLSGCY ECHMVVDPVS GNTSMRATAA TICPCPDCGE  240
VFVRQESLHQ HQSIRHAVSE LGADDTSPNI IEIIFQSSWL KKQSPVCKVD RXSKVHNTPR  300
TLA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.154680.0bud| inflorescence| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447373.11e-149uncharacterized protein LOC8076513
TrEMBLC5YB321e-148C5YB32_SORBI; Uncharacterized protein
STRINGSb06g033920.11e-148(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.18e-37C2H2-like zinc finger protein