PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002234
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family B3
Protein Properties Length: 316aa    MW: 35489 Da    PI: 7.5613
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17281152PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-90698PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-123653698
               EEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 36 ltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               lt++d +g++W +++++  +++s++yvl+ G     +a +L++gD+v+F++++  +++lv+++++
  Sof002234  3 LTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQALQLQAGDTVTFSRID-PGGKLVMGFRK 65
               6899***********9989999999***9.********************887.78878888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.574167IPR003340B3 DNA binding domain
PfamPF023622.5E-9365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-16375IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-11365No hitNo description
SuperFamilySSF1019362.75E-10366IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5105011.816227277IPR011124Zinc finger, CW-type
PfamPF074961.1E-8232270IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
XPLTIQDARG KEWHFQFRFW PNNNSRMYVL EGVTPCIQAL QLQAGDTVTF SRIDPGGKLV  60
MGFRKATNTV SLPDSQISAI ANGSLLSETL FSTANENIGV VSGYPGFLHS IKGAADLHPS  120
SLYDHHMNSA DGDVSWNKTD KFSSRPDEGS LQFLQKRSRN IGSKSRRFLI DAEDAMELKL  180
TWEEAQELLR PAPTAKPTVV MIEDYEFEEY DEPPVFAKRS NFTIRATGEQ DQWIQCDECS  240
KWRRVPLNVI GASKWTCHHN LWNPNACSCS RLKISPKKVP SGIPHFEKIE EPKGHFGLKL  300
NVLKRMASAL DPLPGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C6e-3626959126B3 domain-containing transcription repressor VAL1
5yzz_C6e-3626959126B3 domain-containing transcription repressor VAL1
5z00_C6e-3626959126B3 domain-containing transcription repressor VAL1
5z00_G6e-3626959126B3 domain-containing transcription repressor VAL1
5z00_K6e-3626959126B3 domain-containing transcription repressor VAL1
5z00_M6e-3626959126B3 domain-containing transcription repressor VAL1
6j9a_A6e-3626960127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.6480.0crown| inflorescence| leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308969.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U31e-157Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1D6IMX10.0A0A1D6IMX1_MAIZE; B3 domain-containing transcription repressor VAL2
TrEMBLC5X5M10.0C5X5M1_SORBI; Uncharacterized protein
STRINGSb02g043000.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-76HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]