PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof002214

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 317aa MW: 33806.6 Da PI: 8.2755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17249585	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-20261	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.5e-09	134	181	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Sof002214 134 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 181 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	128	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.96E-10	128	185	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.2E-17	130	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.123	130	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-6	134	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-9	136	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
XAGLFGVPGV AAGSGCGSGG GRSPEGSSVS DPAWARARDD GNVRKRKAPP TGSAGGKEAC 60 LGKAAEVKGP DGKRCRVGAS DSPVKPKVEE AAASDASVEV KGQKKGKGKS PKPAVEPPKD 120 YVHVRARRGQ ATDSHSLAER VRREKISQRM KFLQDLVPGC NKVVGKALML DEIINYVQSL 180 QQQVEFLSMK LATVNPQLDF SNLSTLLHKD MYQPCGPSAN SIFPLESAGA AFPFCDQADL 240 FQNFGSGGME DQCSLSLLDT ALPHTANPQF AFQKQQKDFW EDGLQNALPN RSEQRPEDGL 300 LIPSFYGQLP ADSGKEX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9367	0.0	bud\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151910.1	0.0	BHLH transcription factor
Swissprot	Q9CAA9	5e-54	BH049_ARATH; Transcription factor bHLH49
TrEMBL	B6U6D0	0.0	B6U6D0_MAIZE; BHLH transcription factor
STRING	GRMZM2G144275_P04	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	2e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]