PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof001891

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 352aa MW: 37407.7 Da PI: 7.8402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17408599	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-60624	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	251	284	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +++eYIk L Sof001891 251 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 284 555666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.363	235	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-4	245	288	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-7	245	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-10	245	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
XTDPAGGGAA VVQQPLACYT DWAAHPYMSS AATNLHGFLQ DGHQQDMSST TEQSAMTASS 60 LMNASSNNLA LALQGHHHKE QQDHQQILSS FGSELLLSPT SPYGFQSSLL RSLMEPTAAA 120 AAKPQALPGY QQYDQYQQMG MGQARFAPAG ATREALQFTN DAPFWNPSAA GFGVPPAPAA 180 ANQASSVRSV KPSPTARTTA TLALKTALEG VGESASSIIT KKKANGEPAF KKSRLETPSP 240 LPTFKVRKEK LGDRVTALQQ LVAPFGKTDT ASVLHETIEY IKFLHDQVGV LSAPYLKNNG 300 HHQVPHLKSS SPDKSKDDSH AGEVSLKGRG LCLVPISSTF AVASEVPVDF VW

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

XTDPAGGGAA VVQQPLACYT DWAAHPYMSS AATNLHGFLQ DGHQQDMSST TEQSAMTASS  60
LMNASSNNLA LALQGHHHKE QQDHQQILSS FGSELLLSPT SPYGFQSSLL RSLMEPTAAA  120
AAKPQALPGY QQYDQYQQMG MGQARFAPAG ATREALQFTN DAPFWNPSAA GFGVPPAPAA  180
ANQASSVRSV KPSPTARTTA TLALKTALEG VGESASSIIT KKKANGEPAF KKSRLETPSP  240
LPTFKVRKEK LGDRVTALQQ LVAPFGKTDT ASVLHETIEY IKFLHDQVGV LSAPYLKNNG  300
HHQVPHLKSS SPDKSKDDSH AGEVSLKGRG LCLVPISSTF AVASEVPVDF VW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.200	0.0	bud\| crown\| inflorescence\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002447167.1	0.0	transcription factor bHLH112
TrEMBL	C5YGN2	0.0	C5YGN2_SORBI; Uncharacterized protein
STRING	Sb06g029680.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	4e-41	bHLH family protein