PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof001677

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 386aa MW: 41568.3 Da PI: 5.3567

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-74010	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.6e-11	339	384	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L++l+P++ kK +Ka++L + ++++k Lq Sof001677 339 HSIAERLRREKISDRMKSLQDLVPES-----KKADKASMLDEKIDHVKFLQ 384 99*********************9.....9***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.97E-12	332	384	No hit	No description
PROSITE profile	PS50888	16.691	334	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-12	334	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-14	336	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-8	339	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-6	340	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
XVAXDHASVY FSAGSYFSSW PVNSASESYS LADGSVESYG GEGSMPPSSY FMTVRSDHNL 60 KFSVHEQDST MLPNEQLTYA GAGQTDLLPG DTLSRDKLCE NLLELQQLQN NNNLQSNLVA 120 PGVLQHNSTP GVFHPQLNTP GLSELPHALS SSIDSNGSEV SAFLADVNAV SSAPTLCSAF 180 QNASSFMEPV NLEAFSFQGA QSDSVLNKTC HPNGDISVFD SATLASLHDS KEFITGRLPS 240 FASVQEANLA SSGFKTQKQE QNAMCNVPIP AFTARNQMSV AATQGALIPQ KIPSWINENK 300 SEGPVSHPSD VQTQPNSAGN GVGVKPRVRA RRGQATDPHS IAERLRREKI SDRMKSLQDL 360 VPESKKADKA SMLDEKIDHV KFLQLX

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

XVAXDHASVY FSAGSYFSSW PVNSASESYS LADGSVESYG GEGSMPPSSY FMTVRSDHNL  60
KFSVHEQDST MLPNEQLTYA GAGQTDLLPG DTLSRDKLCE NLLELQQLQN NNNLQSNLVA  120
PGVLQHNSTP GVFHPQLNTP GLSELPHALS SSIDSNGSEV SAFLADVNAV SSAPTLCSAF  180
QNASSFMEPV NLEAFSFQGA QSDSVLNKTC HPNGDISVFD SATLASLHDS KEFITGRLPS  240
FASVQEANLA SSGFKTQKQE QNAMCNVPIP AFTARNQMSV AATQGALIPQ KIPSWINENK  300
SEGPVSHPSD VQTQPNSAGN GVGVKPRVRA RRGQATDPHS IAERLRREKI SDRMKSLQDL  360
VPESKKADKA SMLDEKIDHV KFLQLX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.22794	0.0	crown\| inflorescence\| meristem\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438003.1	0.0	transcription factor bHLH66 isoform X2
TrEMBL	C5Z5Y5	0.0	C5Z5Y5_SORBI; Uncharacterized protein
STRING	Sb10g006250.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	7e-29	LJRHL1-like 2