PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001487
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family B3
Protein Properties Length: 439aa    MW: 48922.5 Da    PI: 9.1467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17395890PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-86082PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.63.9e-1211763398
               -SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 33 sktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               +  l+++d sg++W +++++  +++s++yvl+ G     +a +L++gD+v+F++++  e++l +++++
  Sof001487 11 GLPLKVQDASGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQAMQLQAGDTVTFSRID-PEGKLIMGFRK 76
               45699*************9989999999***9.********************987.77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.09E-11176No hitNo description
PROSITE profilePS508639.573178IPR003340B3 DNA binding domain
SMARTSM010190.004277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-18282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-10277IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-91276IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149232282IPR011124Zinc finger, CW-type
PfamPF074963.1E-11237279IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
AYFPPISQPE GLPLKVQDAS GKEWIFQFRF WPNNNSRMYV LEGVTPCIQA MQLQAGDTVT  60
FSRIDPEGKL IMGFRKATNN SSEQEQITKP ANGAPASSEA NGKVSGPDSS PNAAVSRQNK  120
VNTETKSSSP VEQATASKMD KDGLTQKEGP GTASSSPGSV KRKTTNLGQK NKRLRMDNEE  180
SMELKITWEE AQELLRPPPK APSIVIVDGH EFEEYEEPPI LGRKTYFAAD KSGSNHQWAQ  240
CEDCSKWRKL PIDALLPSKW TCSDNKWDPE RSSCEPAQEI SMEELAELIP IKHAKKPKLR  300
MESDAIDASD GLDTLANLAI LGEGEALPSQ PTTKHPRHRP GCSCIVCIQP PSGKGPKHKQ  360
TCTCNVCMTV RRRFRTLMLR REKKATTDTP RKKETGQSNE KVTQAVFVPA VARASATQLP  420
WKSRWNWPWA PKTWQWITK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-4318448131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.54200.0bud| callus| crown| inflorescence| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308874.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1B6QF040.0A0A1B6QF04_SORBI; Uncharacterized protein
STRINGSb02g036430.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-119HSI2-like 1