PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001415
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 471aa    MW: 51087.4 Da    PI: 9.294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17404542PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-985133733PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.59.9e-18189238255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Sof001415 189 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 238
                889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.8E-24184258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-19187262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-15189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-16189242No hitNo description
SMARTSM003531.9E-13193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
XYIIRTNNRN FLLKTHDFLQ PLDQKPGPPP LPASAAESRH RQQQVVHALP LPGGVGTFSI  60
SPAPVSVALP AAAVVKSEPP FVLWGQPAAT LQPGARGHQQ QQWALPFAGA GQVRPPPQQQ  120
APPDRKGRGG GGVMESGSRS SGGAGFDDDD GLTTRREVSS SLQDLTVRVD RKAGSCSDGG  180
TDQRPNTPRS KHSATEQRRR SKINDRFQIL RELLPHNDQK RDKATFLLEV IEYIRFLQEK  240
VQKYEATFPE WNQENAKMLP WSNMYFRSFW KNAQSKGQIP GDSPPDPSHF MRNGSSPGSN  300
FTGKLEDNLN IVTSAAASGA QDQAETDHMA SGCYRSAETP ANITNISQSQ PQWTGPSPVD  360
DFAVNREMLN NQQLAIDEGT ISVSSNYSKE LLNSLTHALQ SSGVDLSQAS ISVQINLGKR  420
AVKRPAAGVS SNSKEPTDPA SNNELSHQLT MLGAGADDLS HATKRHKPGN S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.147520.0crown| inflorescence| leaf| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308858.10.0transcription factor BIM2 isoform X1
TrEMBLB6SVP60.0B6SVP6_MAIZE; Transcription factor BIM2
STRINGGRMZM2G089501_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-59BES1-interacting Myc-like protein 2