PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Sof001274 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||||||||||
Family | MYB_related | ||||||||||||||||
Protein Properties | Length: 98aa MW: 10561.9 Da PI: 9.9239 | ||||||||||||||||
Description | MYB_related family protein | ||||||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 41 | 72 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd +lv v+++G ++W+ a+ g Sof001274 41 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSG 72 79***********************9999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.61E-8 | 36 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.771 | 36 | 74 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 40 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 41 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-6 | 43 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 98 aa Download sequence Send to blast |
MATPAAASMC GSKSKTKLQG GGERXSKGSG GGNSPPAAMR KGPWTEEEDA QLVWFVRLFG 60 ERRWDFLAKV SGLRGGGCLP KHAYIHIHVY GYKCMLGD |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.1772 | 1e-165 | bud| leaf| root |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439162.1 | 1e-26 | transcription factor MYB21 | ||||
TrEMBL | C5YYM1 | 3e-25 | C5YYM1_SORBI; Uncharacterized protein | ||||
STRING | Sb09g001590.1 | 5e-26 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46130.1 | 4e-14 | myb domain protein 48 |