PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof001089 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||||||
Protein Properties | Length: 201aa MW: 22650.9 Da PI: 7.295 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.4e-13 | 5 | 49 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++N+++ Lr+++P+ +K++Ka+i + A+eYI +Lq Sof001089 5 ILMERDRRRKLNDKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 49 579*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.955 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-12 | 3 | 53 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-17 | 4 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-11 | 5 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-15 | 5 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-17 | 5 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
XNKNILMERD RRRKLNDKLY ALRSVVPNIT KMDKASIIKD AIEYIEQLQA EERRMLQEVR 60 ALEADAAEER CDYEYDESAL LQAAERGKKR MKRTQSVPSS SVPGPVEVLE LRVSEVGDRV 120 LVVNVTCGKG RDAMARVCRA VEELRLRVIT ANITSVAGCL MHTIFVEVDL DQANRIQMKH 180 MIEAALTQLD AAGSPPSVMS Y |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.13351 | 1e-34 | bud| crown| inflorescence| leaf| meristem| root| seed |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445107.1 | 1e-118 | transcription factor bHLH35 | ||||
TrEMBL | C5YHE6 | 1e-117 | C5YHE6_SORBI; Uncharacterized protein | ||||
STRING | Sb07g004190.1 | 1e-118 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-48 | bHLH family protein |