PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000758
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 306aa    MW: 33823 Da    PI: 9.3478
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17333388PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-107838PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-107839PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-103074447
                     S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                     WT+eE +++  a + l  g  +W+++ar ++ gRt  +++s++ ++
        Sof000758 30 WTAEENKRFESALAGLDLGhpDWEKVARAIP-GRTVREVVSHFKNL 74
                     *************97655555**********.***********997 PP
2Myb_DNA-binding46.49.3e-15141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        Sof000758 141 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVHTRTPTQVASHAQKY 185
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4912579IPR017884SANT domain
SMARTSM007175.5E-52677IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-52874IPR009057Homeodomain-like
SuperFamilySSF466894.16E-93082IPR009057Homeodomain-like
CDDcd001672.90E-93074No hitNo description
PfamPF002491.5E-73074IPR001005SANT/Myb domain
PROSITE profilePS5129418.989134190IPR017930Myb domain
SuperFamilySSF466898.22E-18135190IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-17137188IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.9E-12138184IPR009057Homeodomain-like
SMARTSM007173.2E-13138188IPR001005SANT/Myb domain
CDDcd001671.80E-11141186No hitNo description
PfamPF002491.1E-12141185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMRETYMDVL PPVDHIAARS NWLPAAARLW TAEENKRFES ALAGLDLGHP DWEKVARAIP  60
GRTVREVVSH FKNLQLDVHQ IESGQVPLPV YGGGASSFTL QWDGNGGYGP GDFRHGYRFG  120
VGCGKRHHGR TPEQERKKGV PWTEEEHKLF LLGLKKYGKG DWRNISRNFV HTRTPTQVAS  180
HAQKYFIRLN SGGKDKRRSS IHDITTVNLT DEQPPSPSQS SLITNQSNTS VPTVGIGQFS  240
LAADAKQLGA GNLPFNSPSR TSVMATYRMD LQDQGLQCGP LHDQLVANQT VCLGEITLHH  300
GSGARE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-132591673RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.108340.0crown| inflorescence| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455217.20.0transcription factor DIVARICATA
RefseqXP_021312949.10.0transcription factor DIVARICATA
SwissprotQ8S9H75e-77DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1B6Q1W40.0A0A1B6Q1W4_SORBI; Uncharacterized protein
STRINGGRMZM2G079458_P041e-176(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-67MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]