PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000742
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 311aa    MW: 33225.8 Da    PI: 7.1941
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-123088PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-123090PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.11.3e-3079132255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +rl+Wt +LH+rFv av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl
  Sof000742  79 ARLKWTRQLHDRFVLAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 132
                7****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.49975135IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-3176136IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1578135IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-2279133IPR006447Myb domain, plants
PfamPF002494.9E-680131IPR001005SANT/Myb domain
PfamPF143796.6E-15182221IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
XLSTSELLLL AVSPRYKQQP LSSTVVVSSG TTPAAAAASH AGHATDAAAA AAIRSAAVVT  60
LEMSSLGGQQ QHGHGEARAR LKWTRQLHDR FVLAVAQLGG ADKATPKSVL RAMAVPGLTL  120
YHLKSHLQKY RLAVSRGLAS PLGDDGDGTD ERSSSSESQP DEYDDDDTVA ELHADSSRSM  180
ARMQREVKRK LQEQIEVQRH LQLRIEAHGR YLQAVLRPAQ EVLADDHSLG SPAGAEAAKA  240
ELSELASAVD TGCLSSSCSC CCSPSPVPTR HRFTDSCVTS SAFLEAESHA PAAGCQWLQL  300
HXVRLYARLL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1777136160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.63591e-149bud| crown| inflorescence| leaf| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444396.11e-111myb family transcription factor APL
SwissprotF4I2743e-47PHL8_ARATH; Myb family transcription factor PHL8
SwissprotQ9SQQ91e-46PHL9_ARATH; Myb-related protein 2
TrEMBLC5YL871e-110C5YL87_SORBI; Uncharacterized protein
STRINGSb07g021290.11e-110(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.32e-42G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]