PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof000742 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | G2-like | ||||||||||||
Protein Properties | Length: 311aa MW: 33225.8 Da PI: 7.1941 | ||||||||||||
Description | G2-like family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.1 | 1.3e-30 | 79 | 132 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rl+Wt +LH+rFv av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl Sof000742 79 ARLKWTRQLHDRFVLAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 132 7****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.499 | 75 | 135 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-31 | 76 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-15 | 78 | 135 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-22 | 79 | 133 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.9E-6 | 80 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.6E-15 | 182 | 221 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
XLSTSELLLL AVSPRYKQQP LSSTVVVSSG TTPAAAAASH AGHATDAAAA AAIRSAAVVT 60 LEMSSLGGQQ QHGHGEARAR LKWTRQLHDR FVLAVAQLGG ADKATPKSVL RAMAVPGLTL 120 YHLKSHLQKY RLAVSRGLAS PLGDDGDGTD ERSSSSESQP DEYDDDDTVA ELHADSSRSM 180 ARMQREVKRK LQEQIEVQRH LQLRIEAHGR YLQAVLRPAQ EVLADDHSLG SPAGAEAAKA 240 ELSELASAVD TGCLSSSCSC CCSPSPVPTR HRFTDSCVTS SAFLEAESHA PAAGCQWLQL 300 HXVRLYARLL R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 77 | 136 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.6359 | 1e-149 | bud| crown| inflorescence| leaf| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444396.1 | 1e-111 | myb family transcription factor APL | ||||
Swissprot | F4I274 | 3e-47 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
Swissprot | Q9SQQ9 | 1e-46 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | C5YL87 | 1e-110 | C5YL87_SORBI; Uncharacterized protein | ||||
STRING | Sb07g021290.1 | 1e-110 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 2e-42 | G2-like family protein |
Publications ? help Back to Top | |||
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