PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000735
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 314aa    MW: 33944.9 Da    PI: 4.5956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-54864PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-54867PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-730133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000472633021054
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +rRR+ri +  + Lr ++P      +k  +  ++L +A+ Y+++L
  Sof000735 263 KRRRERIQETVAALRNIVPGG---IAK--DATAVLDEAICYLQYL 302
                9******************97...333..3458999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.788253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-6263310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-7263309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGDKVNPWCH WHNPPWKFNT ETSAGNLRPP DVGLVNANSV ALPAYLRTVA APVPFFTASI  60
AERPLSTAPR YATTLAPSLE LPALYPSRKR PLVFYQEENH APISAPLLSK GPLDPVPELQ  120
GSNETNVTDV GAEETEGIHE NTDEINALLD SDSDEGYEKL LELDRVRRQS PAENDTLSVE  180
SVASAGAATD PAPPAKKRKL SSCTDKSVVD TASSARPDHS IEQKLLVNDS DAQSCCIGEV  240
ESDHKFSLGE VEAAEGDSPD DQKRRRERIQ ETVAALRNIV PGGIAKDATA VLDEAICYLQ  300
YLKLKVKTLG AVSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306444.10.0transcription factor bHLH144
TrEMBLC5WXP20.0C5WXP2_SORBI; Uncharacterized protein
STRINGSb01g033470.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.17e-11root hair defective 6-like 4