PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof000380

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

WRKY

Protein Properties

Length: 298aa MW: 31317.8 Da PI: 9.9425

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-119328	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.8	3.9e-32	192	250	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Sof000380 192 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 250 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-33	177	250	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-28	184	251	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	187	252	IPR003657	WRKY domain
SMART	SM00774	9.8E-37	192	251	IPR003657	WRKY domain
Pfam	PF03106	5.4E-25	193	249	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MALGHGGQHM TSSSTGGAAG MAVSSSSTPT ITFAFQPSPP PTSALALAHH GVLGYGSSLL 60 LDHHPTTTTS SASSSHAASS TTLHHHLHGH AAAAAAPHTS LSPPTTRASP PPPHPWSTTT 120 ACEEGPAAPH DRQAGQGGRP PKGKGAAVIS EGSAALGVGA VRMKKAGGGG KARRKVREPR 180 FCFKTMSDVD VLDDGYKWRK YGQKVVKNTQ HPRSYYRCTQ DNCRVKKRVE RLAEDPRMVI 240 TTYEGRHVHS PSRDDDDDAA RANARDELSS GSLQIRQAIS TSSSSEVKFC QPPPAAES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	183	249	8	74	Probable WRKY transcription factor 4
2lex_A	2e-25	183	249	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.23173	0.0	inflorescence\| meristem\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001132878.1	1e-122	uncharacterized protein LOC100194371
TrEMBL	B4FIG2	1e-121	B4FIG2_MAIZE; Putative WRKY transcription factor 13
STRING	GRMZM2G151444_P01	1e-122	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	3e-48	WRKY DNA-binding protein 13