PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Sof000332 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||||||||||
Protein Properties | Length: 386aa MW: 43067.4 Da PI: 4.7543 | ||||||||||||||||
Description | NAC family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163 | 1.1e-50 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd elv++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd+ ++ +++ Sof000332 6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRIITL-NSR 103 79*************************988.89**************95335666777*************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktL+f++g+apkg +tdWvm ey++ Sof000332 104 TVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-62 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.766 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK 60 DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRIITL NSRTVGMKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDEDLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNAE 180 AESSMFPLMT SSEVVNPTEG PRAQPAAPAG ALQEPPLHNS SATCAGEESS FDHATANTCA 240 EDVTFGYTVA SSAIQDIPAQ MSGDGVVSVN NISNEANDMY SPCDCDGFLL EELSRFLNDS 300 PVRNTPFGEC SGLPPMPEAE AHAFEVNSFG LFNELLRLVG FEAWITTLTP TMWIPQITFG 360 LPPERKLSRG DYMGTKLDFW VRNQIX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-53 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.7081 | 0.0 | bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302870.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A1B6P8R4 | 0.0 | A0A1B6P8R4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g020880.2 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 6e-84 | NAC domain containing protein 103 |