PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 99462 | ||||||||
Common Name | SELMODRAFT_99462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB | ||||||||
Protein Properties | Length: 122aa MW: 13372.1 Da PI: 10.8774 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 22 | 67 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++I++ + gR++k+c++rw + 99462 22 KGPWSPEEDAALQKLVDKYGARNWSLISKGIA-GRSGKSCRLRWCNQ 67 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.7e-18 | 76 | 118 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++a+ q+G++ W+tIar ++ gRt++ +k++w++ 99462 76 PFTAAEDATIIKAHSQHGNK-WATIARLLP-GRTDNAIKNHWNST 118 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.698 | 17 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-32 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 21 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 23 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-13 | 24 | 66 | No hit | No description |
Pfam | PF13921 | 5.9E-17 | 25 | 82 | No hit | No description |
SMART | SM00717 | 8.7E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.336 | 74 | 122 | IPR017930 | Myb domain |
CDD | cd00167 | 5.70E-11 | 76 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 76 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MALGKSGGGS GGASAEELDR IKGPWSPEED AALQKLVDKY GARNWSLISK GIAGRSGKSC 60 RLRWCNQLSP QVEHRPFTAA EDATIIKAHS QHGNKWATIA RLLPGRTDNA IKNHWNSTLR 120 RR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-40 | 21 | 122 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-40 | 21 | 122 | 3 | 104 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00632 | PBM | Transfer from PK28565.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024536333.1 | 9e-84 | transcription factor MYB44-like | ||||
Swissprot | Q9FDW1 | 2e-58 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | D8RRF1 | 7e-84 | D8RRF1_SELML; Uncharacterized protein (Fragment) | ||||
TrEMBL | D8RXB4 | 7e-84 | D8RXB4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ23406 | 1e-84 | (Selaginella moellendorffii) | ||||
STRING | EFJ25387 | 1e-84 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-60 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | 99462 |
Entrez Gene | 9642638 |