PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 98669
Common NameSELMODRAFT_127220, SELMODRAFT_98669
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 128aa    MW: 14605.9 Da    PI: 10.3653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
98669genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd ll + ++q+G g+W++ ++  g+ R++k+c++rw +yl
            98669 14 RGPWTPEEDMLLTKHIEQHGEGNWRALPKAAGLLRCGKSCRLRWVNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding55.31.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l++ ++++lG++ W++Ia++m+ gRt++++k++w+++l
            98669  67 RGNISEDEEDLIIMLHALLGNR-WSLIAARMP-GRTDNEIKNYWNTHL 112
                      7899******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.426961IPR017930Myb domain
SuperFamilySSF466894.03E-3111108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002494.9E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-241568IPR009057Homeodomain-like
CDDcd001672.69E-111661No hitNo description
PROSITE profilePS5129425.79362116IPR017930Myb domain
SMARTSM007172.2E-1666114IPR001005SANT/Myb domain
PfamPF002493.4E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2669116IPR009057Homeodomain-like
CDDcd001677.24E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGRAPCCSKV GLNRGPWTPE EDMLLTKHIE QHGEGNWRAL PKAAGLLRCG KSCRLRWVNY  60
LRPNVKRGNI SEDEEDLIIM LHALLGNRWS LIAARMPGRT DNEIKNYWNT HLSKKLASRG  120
LDPKTHKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002972896.23e-90myb-related protein 306
RefseqXP_002988033.22e-90myb-related protein 306
SwissprotQ9M2D96e-67MYB17_ARATH; Transcription factor MYB17
TrEMBLD8RNQ03e-89D8RNQ0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ108256e-90(Selaginella moellendorffii)
STRINGEFJ261176e-90(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-69myb domain protein 17
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]