PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 96572 | ||||||||
Common Name | ANT-1, SELMODRAFT_1154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | AP2 | ||||||||
Protein Properties | Length: 180aa MW: 20722.2 Da PI: 10.1626 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.4 | 1.7e-08 | 2 | 51 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 +++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g 96572 2 RHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 51 89************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 50.5 | 5e-16 | 94 | 145 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t eeAa+a++ a+ k++g 96572 94 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 145 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.724 | 1 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-12 | 2 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-10 | 2 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-6 | 2 | 51 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-14 | 2 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-12 | 2 | 61 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 1.44E-18 | 94 | 155 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-10 | 94 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-23 | 94 | 155 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-19 | 95 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-32 | 95 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 95 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-5 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-5 | 135 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
SRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GPTTTINFPL 60 SDYEKELEEM KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD 120 LYLGTFSTQE EAAEAYDIAA IKFRGINAVT NFDISRYDLK KICSSPSLLL GETAKRYKDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024538184.1 | 1e-124 | uncharacterized protein LOC9639077 | ||||
Swissprot | Q6PQQ4 | 1e-110 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | D8RL62 | 1e-132 | D8RL62_SELML; Uncharacterized protein ANT-1 (Fragment) | ||||
STRING | EFJ26861 | 1e-133 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-107 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 96572 |
Entrez Gene | 9640588 |