PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 94010 | ||||||||
Common Name | ICE, SELMODRAFT_138758, SELMODRAFT_94010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 23631.3 Da PI: 7.8142 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 26 | 68 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk +K++ a+iL A+eY+k+L 94010 26 MAERRRRKKLNDRLYMLRSVVPKI-----TKMDRASILGDAIEYLKEL 68 79*********************7.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.599 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-17 | 22 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-10 | 25 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-14 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-16 | 26 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.10E-13 | 26 | 72 | No hit | No description |
CDD | cd04873 | 1.84E-7 | 148 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010444 | Biological Process | guard mother cell differentiation | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGGHQVADKG PSGRGNRKGL PAKNLMAERR RRKKLNDRLY MLRSVVPKIT KMDRASILGD 60 AIEYLKELLQ RINELHSELE GPADGGSMGI PPQQQSGALL SPQSFAPCVK EECPASSISP 120 LPLLPGPPTD LQPAKVEVRT RDGKGINIHM FCARTPGLLL STMRALDDLG LDVQQAVISC 180 FNGFVLDVFR AEQCSDAEIA PEEIKAVLLQ TAGCHEAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-14 | 21 | 78 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 34 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002970916.2 | 1e-155 | transcription factor SCREAM2 isoform X2 | ||||
Refseq | XP_002994520.2 | 1e-155 | transcription factor SCREAM2 isoform X2 | ||||
Swissprot | Q9LPW3 | 8e-81 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | D8RIG6 | 1e-157 | D8RIG6_SELML; Uncharacterized protein ICE | ||||
STRING | EFJ04417 | 1e-158 | (Selaginella moellendorffii) | ||||
STRING | EFJ28242 | 1e-158 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 9e-79 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 94010 |
Entrez Gene | 9633189 | 9641117 |