PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 93784 | ||||||||
Common Name | SELMODRAFT_93784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB | ||||||||
Protein Properties | Length: 158aa MW: 16704.3 Da PI: 10.084 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed lv +v+++G g+W+ + + g+ R++k+c++rw ++l 93784 35 KGPWTPSEDAVLVAYVHKHGEGNWNNVQKNCGLSRCGKSCRLRWANHL 82 79******************************************9996 PP | |||||||
2 | Myb_DNA-binding | 25 | 4.3e-08 | 88 | 115 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g++T+eE+ +++++++lG++ W++ a+ 93784 88 KGAFTPEEERTIIELHAKLGNK-WARMAS 115 799*******************.**9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.305 | 30 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 31 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-14 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 35 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.38E-25 | 36 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-10 | 37 | 82 | No hit | No description |
PROSITE profile | PS50090 | 6.237 | 83 | 116 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-14 | 86 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1 | 87 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-7 | 88 | 116 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MQGGGVAAAA AAALELCEEG RGRGGGGGAV KGLKKGPWTP SEDAVLVAYV HKHGEGNWNN 60 VQKNCGLSRC GKSCRLRWAN HLRPNLKKGA FTPEEERTII ELHAKLGNKW ARMASQASSF 120 SISLELSSSL LFSAIFLSLS LSLSLLAFFA SFLVSML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-21 | 33 | 115 | 25 | 106 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed in germinating seeds by microRNA159 (miR159)-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:15226253, PubMed:17217461). Induced by increased upon gibberellic acid (GA) treatment (PubMed:20699403). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002970548.2 | 3e-80 | transcription factor MYB87 isoform X2 | ||||
Refseq | XP_024531140.1 | 8e-81 | protein ODORANT1 isoform X1 | ||||
Swissprot | O80883 | 1e-50 | MB101_ARATH; Transcription factor MYB101 | ||||
TrEMBL | D8RGZ8 | 1e-108 | D8RGZ8_SELML; Uncharacterized protein | ||||
STRING | EFJ28679 | 1e-109 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-43 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | 93784 |
Entrez Gene | 9632459 |
Publications ? help Back to Top | |||
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