PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 93174
Common NameMADS9-1, SELMODRAFT_450769
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family M-type_MADS
Protein Properties Length: 60aa    MW: 7038.29 Da    PI: 10.7863
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
93174genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.1e-141754946
            HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
  SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
            r+ tf kR +g++KKA EL vLC+a+v v ++  +gk 
   93174 17 RTQTFRKRTEGLFKKAIELQVLCGAKVEVTVIYDSGKK 54
            778*********************98877666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.764160IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-19160IPR002100Transcription factor, MADS-box
CDDcd001202.59E-15260No hitNo description
PRINTSPR004045.3E-12323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-141655IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MGRRKIDIKY LVKNNPRTQT FRKRTEGLFK KAIELQVLCG AKVEVTVIYD SGKKHFFYSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970519.11e-37serum factor response D
RefseqXP_002978603.11e-37serum factor response D
TrEMBLD8RGU63e-36D8RGU6_SELML; MADS-domain transcription factor
TrEMBLD8S5G02e-36D8S5G0_SELML; MADS-domain transcription factor
STRINGEFJ205894e-37(Selaginella moellendorffii)
STRINGEFJ286495e-37(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.19e-12AGAMOUS-like 15
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]