PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 92334 | ||||||||
Common Name | SELMODRAFT_92334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24725.5 Da PI: 8.5026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + g 92334 6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAARAYDEAARLMGG 55 69******9.**********8.....334**********************97765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.04E-33 | 5 | 65 | No hit | No description |
PROSITE profile | PS51032 | 21.522 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-33 | 6 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-11 | 6 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRPQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAARAYDEAA RLMGGPRART 60 NFPYDPNAPP HPSSSTLLST LSAKLNRCFS SSSSSSSCST DPHKKDPRVS QSLTCLRLDP 120 EQSNLGIWQK KSGRQPESNW VMKVHFGSQG GGGVSSDIVL PTDNPAPPQP IEHKKMKSEE 180 DLATEMIEEL LNFPDSSSPS SSTSSSEAKN PNFSSSDLLH HILV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 5 | 63 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002969836.1 | 1e-165 | ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | D8RG12 | 1e-164 | D8RG12_SELML; Uncharacterized protein | ||||
STRING | EFJ28960 | 1e-164 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 5e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 92334 |
Entrez Gene | 9645666 |
Publications ? help Back to Top | |||
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