PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

9104

Common Name

SELMODRAFT_9104, SELMODRAFT_9114

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 85aa MW: 9936.57 Da PI: 10.6969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
9104	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.3e-06	16	38	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H 9104 16 FICEICNKGFQRDQNLQLHRRGH 38 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.97E-6	14	39	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.8E-7	15	38	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	4.6E-6	16	38	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	16	38	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	18	38	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
EVIALSPKTL MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK DVRKRVYVCP 60 EPSCVHHDPS RALGDLTGIK KHFCR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY877260	3e-08	Selaginella moellendorffii zinc finger protein gene, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024365599.1	6e-57	protein indeterminate-domain 1-like isoform X1
Refseq	XP_028076239.1	2e-57	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	9e-54	IDD1_ARATH; Zinc finger protein ENHYDROUS
Swissprot	Q9SCQ6	6e-54	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2K1L2D8	1e-55	A0A2K1L2D8_PHYPA; Uncharacterized protein
TrEMBL	D8RTP8	3e-57	D8RTP8_SELML; Uncharacterized protein (Fragment)
STRING	PP1S165_3V6.1	2e-56	(Physcomitrella patens)
STRING	EFJ08077	6e-58	(Selaginella moellendorffii)
STRING	EFJ24717	6e-58	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-56	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	9104
Entrez Gene	9636420 \| 9659442

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]