PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 90981
Common NameSELMODRAFT_90981
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 314aa    MW: 33574.9 Da    PI: 5.8546
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
90981genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08254300347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      +W+  Ed+ l+ + k +++g   +W++I +t+  gR+  qc  r++ +
            90981 254 AWSDGEDKALLAGLKAFPKGtpsRWDRIQATVR-GRSKSQCLKRYLEL 300
                      7********************************.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.784155198IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-4158198IPR009057Homeodomain-like
SMARTSM007171.2E-5159212IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-8161212IPR009057Homeodomain-like
CDDcd001671.82E-4162209No hitNo description
SMARTSM007172.1E-6251303IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-10252301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-6254300IPR009057Homeodomain-like
CDDcd001674.22E-6254300No hitNo description
PfamPF002492.3E-6254300IPR001005SANT/Myb domain
PROSITE profilePS500907.155255301IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDFDFVDECR PNFRLQSNAG VPPQQGDPIV DRRHAAICVI LGMSVLLCCA WVAAWSSIAQ  60
LVAAWIAVSL ILGPLAPISL TAGDCSVGQG VIVAPLDPSP APLAVDAAAD KKISRSRKHA  120
GAARAVDSSP QVDGTGGILE AQEGNASWNG TGESDGAVVE GEWSEEEVAF LRKQLAKHPR  180
GTARRWQVIA QSFGGSRTVD NVIQMAKALA DKKPGDEDAY AKFLAQRKEF EEGWQLVDEE  240
DDPSPAPGNA GSVAWSDGED KALLAGLKAF PKGTPSRWDR IQATVRGRSK SQCLKRYLEL  300
RDGFRSSKLR KES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529333.10.0transcription factor MAMYB
TrEMBLD8RDK00.0D8RDK0_SELML; Uncharacterized protein
STRINGEFJ300390.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-44MYB_related family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]