PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 90744
Common NameSELMODRAFT_451277
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family TALE
Protein Properties Length: 294aa    MW: 33319.4 Da    PI: 7.8224
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
90744genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.3e-082432752254
               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +yps++++++L +++gL+ +q+ +WF N+R +
     90744 243 WPYPSEDDKARLVQETGLELKQINNWFINQRKR 275
               59*****************************87 PP
2ELK27.28.9e-10196217122
    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
            ELK +L+++Y+ +++++++E++
  90744 196 ELKIELKQGYKAKINDVREEIL 217
            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.2E-162165IPR005540KNOX1
PfamPF037905.9E-162363IPR005540KNOX1
SMARTSM012565.3E-1776132IPR005541KNOX2
PfamPF037911.6E-1184131IPR005541KNOX2
PfamPF037892.7E-6196217IPR005539ELK domain
PROSITE profilePS512139.498196216IPR005539ELK domain
SMARTSM011880.0084196217IPR005539ELK domain
PROSITE profilePS5007111.434216279IPR001356Homeobox domain
SuperFamilySSF466893.29E-16218282IPR009057Homeodomain-like
SMARTSM003891.1E-10218283IPR001356Homeobox domain
CDDcd000862.01E-10219280No hitNo description
Gene3DG3DSA:1.10.10.607.4E-25223280IPR009057Homeodomain-like
PfamPF059202.9E-18236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVAEEQGGGG GGMDSKLWQS ARLKADLVTH PLYEQLLSAH ISCLRTATPV DQLPKIDAQL  60
AHSSQVAAKY SILATNEQGL SKDKDEVNEF MAHYVTLLRS FKDQLQQHVR VHAMEAVVAC  120
WELEQSLFTL TGKHNFTSRS KREGTGATMS EDEDDQQADS DSGYYDAGMD GHDFTGFGPL  180
IPTETERTLM ERVRHELKIE LKQGYKAKIN DVREEILRKR RAGKLPGDTT SVLKTWWHAH  240
SKWPYPSEDD KARLVQETGL ELKQINNWFI NQRKRNWHSN PSSSTSLKNK RKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13219283872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272292RKRNWHSNPSSSTSLKNKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529848.10.0homeobox protein HD1
SwissprotP480001e-145KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLD8RD780.0D8RD78_SELML; Uncharacterized protein
STRINGEFJ302640.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-139KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]