PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 90720 | ||||||||
Common Name | RR2-1, SELMODRAFT_450181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ARR-B | ||||||||
Protein Properties | Length: 261aa MW: 29434.2 Da PI: 7.1024 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.7 | 8.4e-26 | 198 | 247 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ 90720 198 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKRILELMNVQGLTRENVASHLQ 247 79*******************.***************************** PP | |||||||
2 | Response_reg | 76 | 1.4e-25 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+++ + +l+++l + y +v+++ ++ al++l+e++ +D++l D+ mp+mdG++ll+ e++lp+i+++a+ge +++ + + Ga 90720 20 VLVVDDDRTCLAILKKMLLRCAY-DVTTCGMARLALAMLRENKerFDVVLSDVCMPDMDGFKLLELVGL-EMDLPVIMMSANGETSLVMKGIIHGAC 114 89*********************.***************888778*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++el + 90720 115 DYLLKPIRIKELKN 128 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.9E-136 | 1 | 248 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.28E-34 | 17 | 140 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.5E-42 | 17 | 154 | No hit | No description |
SMART | SM00448 | 1.5E-28 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.919 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.8E-22 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.95E-25 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 2.15E-16 | 195 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 197 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-22 | 198 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-6 | 200 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MRIQASERDM GDQFPAGLRV LVVDDDRTCL AILKKMLLRC AYDVTTCGMA RLALAMLREN 60 KERFDVVLSD VCMPDMDGFK LLELVGLEMD LPVIMMSANG ETSLVMKGII HGACDYLLKP 120 IRIKELKNIW QHVFRRKRNI LKDADGADHD RQKRKPDEGD SMPAAGSAAA AGSKKRKEIK 180 EDDEEFELDM DDSNTLKKPR VVWSVELHQQ FVTAVNQLGI DKAVPKRILE LMNVQGLTRE 240 NVASHLQVSP HSLPRFYIFP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-18 | 197 | 247 | 4 | 54 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002968894.1 | 1e-178 | two-component response regulator ORR21 | ||||
Swissprot | Q6K8X6 | 3e-98 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | D8RDF0 | 1e-177 | D8RDF0_SELML; Two-component response regulator | ||||
STRING | EFJ30010 | 1e-178 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 5e-91 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | 90720 |
Entrez Gene | 9659182 |
Publications ? help Back to Top | |||
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