PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

89986

Common Name

SELMODRAFT_89986, VND4-2

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 160aa MW: 19095.7 Da PI: 9.9156

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
89986	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.7e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +ppGfrFhPtdeelv +yL+kkv+ ++++l +vi+e+d+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k + vg 89986 7 VPPGFRFHPTDEELVGYYLHKKVSCRRIDL-DVIREIDLYKMEPWDLQEkcRIGSaEQTEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKTIHT-KYNFVG 108 69**************************.9***********953434333667*********************************9.8899 PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 ++ktLvfykgrap+g+ktdW+mheyrle 89986 109 MRKTLVFYKGRAPNGQKTDWIMHEYRLE 136 **************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-60	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.882	7	159	IPR003441	NAC domain
Pfam	PF02365	2.8E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MHKHSRVPPG FRFHPTDEEL VGYYLHKKVS CRRIDLDVIR EIDLYKMEPW DLQEKCRIGS 60 AEQTEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKTI HTKYNFVGMR KTLVFYKGRA 120 PNGQKTDWIM HEYRLEDEQS SITNSPDQDG WVVCRVFKKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-54	7	160	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002968396.2	1e-119	NAC domain-containing protein 105 isoform X2
Swissprot	O65508	6e-88	NAC76_ARATH; NAC domain-containing protein 76
TrEMBL	D8RAM9	1e-118	D8RAM9_SELML; Uncharacterized protein VND4-2 (Fragment)
STRING	EFJ30650	1e-118	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36160.1	6e-80	NAC domain containing protein 76

Link Out ? help Back to Top
Phytozome	89986
Entrez Gene	9631642

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]