PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 89227 | ||||||||
Common Name | SELMODRAFT_104521, SELMODRAFT_89227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | TCP | ||||||||
Protein Properties | Length: 86aa MW: 9694.16 Da PI: 10.9313 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108 | 1.5e-33 | 11 | 73 | 2 | 64 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltg 64 g+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk++eWL+++ak ai+el + 89227 11 SGGKDRHSKVFTAKGPRDRRVRLSVSTAIQFYDVQDRLGYDQPSKAVEWLMKKAKNAIDELSQ 73 689*********************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.1E-33 | 12 | 73 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.855 | 13 | 71 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MNISARTLRP SGGKDRHSKV FTAKGPRDRR VRLSVSTAIQ FYDVQDRLGY DQPSKAVEWL 60 MKKAKNAIDE LSQIPLPGID RLTLPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-25 | 18 | 71 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-25 | 18 | 71 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024529105.1 | 2e-53 | uncharacterized protein LOC112345826 | ||||
Refseq | XP_024529106.1 | 2e-53 | uncharacterized protein LOC112345826 | ||||
Refseq | XP_024536722.1 | 1e-53 | AF4/FMR2 family member 4-like | ||||
Refseq | XP_024536723.1 | 1e-53 | AF4/FMR2 family member 4-like | ||||
Swissprot | Q93V43 | 4e-32 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | D8RBQ3 | 3e-56 | D8RBQ3_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ22810 | 5e-57 | (Selaginella moellendorffii) | ||||
STRING | EFJ30830 | 5e-57 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-34 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | 89227 |
Entrez Gene | 9631463 | 9646187 |
Publications ? help Back to Top | |||
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