PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

88625

Common Name

SELMODRAFT_114956

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 490aa MW: 54195.8 Da PI: 4.5835

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
88625	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	399.4	3.6e-122	97	485	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalklfsevsPilkfshl 96 lv+lL++cA+a+s+++++l++ lLarl elasp+g ++m+Rlaayfte+La rla++ + lyk l+ +++++ ++e++aa++++++vsPi+kf+h+ 88625 97 LVDLLVACAQAISAKSTSLIHCLLARLGELASPHGsTAMERLAAYFTEGLACRLASQRPDLYKPLSLETDPSPGsacsseaEEESIAAYHILNHVSPIVKFAHF 200 6899*****************************99**********************9977666543346777779999*************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 aN aIlea++g ++vH+iD+d++qGlQWpaL+qaLa+R+egpp +Ri g+g+ k++++etg+rLa+fA++lg+ fef++ v++rle+++l++L+vk g 88625 201 SANDAILEAFQGRKKVHVIDLDVGQGLQWPALFQALANRSEGPPsLVRISGIGP----FKDSVQETGDRLAEFAQALGLCFEFHA-VVERLEEIRLWMLHVKDG 299 ************************************9999678***....99*********************.7************* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.....eerikvErellgreivnvv 298 Ea+aVn++ qlhr l ++++++ v++l++s++P+vv +ve+ea+hn e F +rf+ +l+yy+a+fd+l++++ + ++r+ vE+ +++rei+n+v 88625 300 EAVAVNCIGQLHRSLLDRQQIQG----VMELIRSTKPEVVAIVEHEAEHNVECFEARFAGSLRYYAAMFDALDSSVVVVDgesslSARTRVEKTIFAREIRNIV 399 ***********77777777....*****************************************98853322223699************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...........sgslvlgWkdrpLvsvSaW 373 ceg++r+erhe++e W+++lee GF++ +s++a qaklll+++ +yr+++ + ++lgW d+pLv+vSaW 88625 400 GCEGEDRIERHERFEGWKRMLEEEGFRNRGMSQRAIVQAKLLLEMFLCPEYRIDKLegkdengsrecCEGITLGWLDQPLVTVSAW 485 *******************************************999444455556655566788************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.808	71	455	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-119	97	485	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MERSGSPASD DAFLIAAGSF DRHHSAFDRE QGLLRDDGDE QQQWEALVEG VLDCSADAQS 60 ESIGGQGYLD AQHQDDDDHR AAENATSDSN KEEKIELVDL LVACAQAISA KSTSLIHCLL 120 ARLGELASPH GSTAMERLAA YFTEGLACRL ASQRPDLYKP LSLETDPSPG SACSSEAEEE 180 SIAAYHILNH VSPIVKFAHF SANDAILEAF QGRKKVHVID LDVGQGLQWP ALFQALANRS 240 EGPPSLVRIS GIGPFKDSVQ ETGDRLAEFA QALGLCFEFH AVVERLEEIR LWMLHVKDGE 300 AVAVNCIGQL HRSLLDRQQI QGVMELIRST KPEVVAIVEH EAEHNVECFE ARFAGSLRYY 360 AAMFDALDSS VVVVDGESSL SARTRVEKTI FAREIRNIVG CEGEDRIERH ERFEGWKRML 420 EEEGFRNRGM SQRAIVQAKL LLEMFLCPEY RIDKLEGKDE NGSRECCEGI TLGWLDQPLV 480 TVSAWSLIR*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MERSGSPASD DAFLIAAGSF DRHHSAFDRE QGLLRDDGDE QQQWEALVEG VLDCSADAQS  60
ESIGGQGYLD AQHQDDDDHR AAENATSDSN KEEKIELVDL LVACAQAISA KSTSLIHCLL  120
ARLGELASPH GSTAMERLAA YFTEGLACRL ASQRPDLYKP LSLETDPSPG SACSSEAEEE  180
SIAAYHILNH VSPIVKFAHF SANDAILEAF QGRKKVHVID LDVGQGLQWP ALFQALANRS  240
EGPPSLVRIS GIGPFKDSVQ ETGDRLAEFA QALGLCFEFH AVVERLEEIR LWMLHVKDGE  300
AVAVNCIGQL HRSLLDRQQI QGVMELIRST KPEVVAIVEH EAEHNVECFE ARFAGSLRYY  360
AAMFDALDSS VVVVDGESSL SARTRVEKTI FAREIRNIVG CEGEDRIERH ERFEGWKRML  420
EEEGFRNRGM SQRAIVQAKL LLEMFLCPEY RIDKLEGKDE NGSRECCEGI TLGWLDQPLV  480
TVSAWSLIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-72	104	486	25	378	Protein SCARECROW
5b3h_D	5e-72	104	486	25	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002967802.1	0.0	scarecrow-like protein 28
Refseq	XP_002981812.2	0.0	scarecrow-like protein 28
TrEMBL	D8SEI1	0.0	D8SEI1_SELML; Uncharacterized protein
STRING	EFJ17294	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5507	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-107	GRAS family protein

Link Out ? help Back to Top
Phytozome	88625
Entrez Gene	9648299

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]