PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 88108
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family B3
Protein Properties Length: 825aa    MW: 92141.6 Da    PI: 8.4535
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
88108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.4e-19303401197
            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
            f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d sgr+W++++++  +++s++yvl+ G     +a +L++gD+v+F++ +  e++l ++ +
  88108 303 FEKVLSASDAGRIGRLVLPKACAEAYfpTISQAEGLPLRINDISGREWQFQFRFwpNNNSRMYVLE-GVTPCIQAMHLQAGDTVTFSRLE-PEGKLIMGYR 401
            99**************************666778888***************9989999999***9.********************665.6665665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-28297406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-18300401IPR015300DNA-binding pseudobarrel domain
CDDcd100175.71E-22301402No hitNo description
PROSITE profilePS5086311.265303404IPR003340B3 DNA binding domain
SMARTSM010195.7E-19303403IPR003340B3 DNA binding domain
PfamPF023623.1E-16303401IPR003340B3 DNA binding domain
PROSITE profilePS5105011.911506556IPR011124Zinc finger, CW-type
PfamPF074961.4E-9512553IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MEPTRHKACM NVRCEAIESA AWKRGWRLRS GDRADLCTDC GSAFELSRFC EKFHAYDPGW  60
RSCIACGKGL HCGCIASIHL FVLLDTGGVS CRGCVDLRES RNVVRSFFFL FSDFPFDLGK  120
EQEENLILKP KSEVDFEQKM AATGSEDEKV RGVAEELSAK REVTYMEEME KLAVTRESPG  180
TQTEVASLNT SLGLGMGIKV DDTAAGNLFQ TESPASGGEA KENPSKYSPI PYRPRHRQVG  240
KQPVPPRVPL SGAAPEPTND PRVARPPADS KGRNQLLPRY WPRITDQEIQ QFTSGDSKIT  300
PLFEKVLSAS DAGRIGRLVL PKACAEAYFP TISQAEGLPL RINDISGREW QFQFRFWPNN  360
NSRMYVLEGV TPCIQAMHLQ AGDTVTFSRL EPEGKLIMGY RKAQDSGDSE YPGAKQTDYK  420
SKAKETQSTL SADKRRGRPL GAKSKRLRLD SEDSLELKTS WEEAQELLRP PPGVTPSFVT  480
IDGHQFEEYE EPPVLTKKTV TRTKPSGEQD RWVQCDDCAK FRRVPLDIFI HTRWTCTDNV  540
WDLKRANCSA AKELSNEDMD QLMDSMSGKA QQRISPSGLD ALATAAAFGD EKAASPPPPA  600
ATTKHPRHRP GCTCIVCIQP PSGKGPKHKP TCVCNVCLTV KRRFKTLMMR RKKRQSEREA  660
ETARKKKAWD KDDGAESAKS HERRDDPAVA VNLDAHDWHA REKHCPSVAD QASRSQCVTA  720
CNVPGAEGRR EERRKDIWML LPEVALKKKC LMLVTGDKTY RVVTHSLEHI WTTSALANQR  780
HPLLSQSRKR SSMLIGLCKH SCEYEGAGET SFVLYYLQGC QQSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-632824102131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1640652KRRFKTLMMRRKK
2640653KRRFKTLMMRRKKR
3651666KKRQSEREAETARKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024528329.10.0B3 domain-containing protein Os07g0563300 isoform X2
TrEMBLD8R9Q10.0D8R9Q1_SELML; Uncharacterized protein HSI2-1
STRINGEFJ309380.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2