PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 86048 | ||||||||
Common Name | SELMODRAFT_86048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 94aa MW: 9615.61 Da PI: 7.3038 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 59.6 | 7.1e-19 | 20 | 67 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 rY C++NhA Gg+ +DGC+Ef ++ ++ C+ACgCHR+FH + 86048 20 QRYGACKRNHALGNGGYLLDGCQEFDTD-----CETSKICSACGCHRSFHTKI 67 69***********************997.....347899***********885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-8 | 16 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.3E-15 | 21 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.424 | 22 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MASQKRAPDP IAAKASAPSQ RYGACKRNHA LGNGGYLLDG CQEFDTDCET SKICSACGCH 60 RSFHTKIGDN PGSTGAGFSE GLLDPPASPG DSR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002966706.2 | 9e-62 | uncharacterized protein LOC9652532 | ||||
TrEMBL | D8R4V0 | 9e-62 | D8R4V0_SELML; Uncharacterized protein | ||||
STRING | EFJ32733 | 1e-62 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 5e-13 | mini zinc finger 2 |
Link Out ? help Back to Top | |
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Phytozome | 86048 |
Entrez Gene | 9652532 |
Publications ? help Back to Top | |||
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