PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 84708 | ||||||||
Common Name | SELMODRAFT_117665, SELMODRAFT_84708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 227aa MW: 24602.1 Da PI: 6.9622 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 159.9 | 7.2e-50 | 39 | 174 | 3 | 137 |
Whirly 3 yktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqs.falsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsG 104 yk+k al++ ++ptf+ dsg ++l+r+G+++le+a+++++r+ydW+kkq+ fals+ e+++++ l++ es effhdp +++s++G vrk+lk+eP +d G 84708 39 YKGKCALNMRLIKPTFKISDSGDAILSREGTVMLEFAPSISQRQYDWGKKQVlFALSVSELGQILALTPSESLEFFHDPNMGKSDAGMVRKSLKIEPTTDRNG 141 9**************************************************769************************************************* PP Whirly 105 lfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 +f+ l+v n++ k++ ++ +P+sk+efa++rs+ 84708 142 FFFGLTVANKVEKAEARLNIPISKGEFAIIRSA 174 ******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.3E-67 | 26 | 190 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.65E-50 | 31 | 195 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.6E-55 | 39 | 174 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MAAHEATGEK LSALAVSLLA GSFVSETRPR RVFADHVFYK GKCALNMRLI KPTFKISDSG 60 DAILSREGTV MLEFAPSISQ RQYDWGKKQV LFALSVSELG QILALTPSES LEFFHDPNMG 120 KSDAGMVRKS LKIEPTTDRN GFFFGLTVAN KVEKAEARLN IPISKGEFAI IRSAANYALP 180 YLMGWHYATE VNGIDEAGAS GASVSGTTAP RSLVQPPSDI DPEWDK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 7e-54 | 31 | 212 | 37 | 212 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 7e-54 | 31 | 212 | 37 | 212 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 7e-54 | 31 | 212 | 37 | 212 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 7e-54 | 31 | 212 | 37 | 212 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024525979.1 | 1e-152 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 | ||||
Refseq | XP_024525980.1 | 1e-152 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 | ||||
Refseq | XP_024543888.1 | 1e-152 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 | ||||
Refseq | XP_024543889.1 | 1e-152 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 | ||||
TrEMBL | D8R3J9 | 1e-166 | D8R3J9_SELML; Uncharacterized protein | ||||
STRING | EFJ15931 | 1e-167 | (Selaginella moellendorffii) | ||||
STRING | EFJ33294 | 1e-167 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14410.1 | 2e-54 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | 84708 |
Entrez Gene | 9634310 | 9654050 |
Publications ? help Back to Top | |||
---|---|---|---|
|