PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 84611 | ||||||||
Common Name | SELMODRAFT_451357, WOX9-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 89aa MW: 10688 Da PI: 9.8361 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.9 | 6.2e-17 | 27 | 87 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 + R+++++eql+ L +lFe+ +++++++e+A l ++te++V +WF+Nr+a+ k+ 84611 27 KVRWKPNEEQLRMLVRLFEEeGDSINKQRIKEIAVDLarqgDVTEANVHNWFHNRKARAKR 87 67*****************989*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 67.8 | 1.9e-22 | 27 | 89 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + RW P++eQ+++L +l+++ + nk++i++i+ L++ G ++++NV++WF NrkaR ++kq 84611 27 KVRWKPNEEQLRMLVRLFEEEGDSINKQRIKEIAVDLARQGDVTEANVHNWFHNRKARAKRKQ 89 68******************99***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.629 | 23 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.94E-12 | 25 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.37E-5 | 27 | 89 | No hit | No description |
Pfam | PF00046 | 1.4E-14 | 27 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-10 | 28 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MEESHYQQQQ QQQQQQALQE LPPAVVKVRW KPNEEQLRML VRLFEEEGDS INKQRIKEIA 60 VDLARQGDVT EANVHNWFHN RKARAKRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024526432.1 | 1e-53 | ecdysone-induced protein 74EF isoform X1 | ||||
Refseq | XP_024526433.1 | 1e-53 | ecdysone-induced protein 74EF isoform X2 | ||||
TrEMBL | D8R3X4 | 7e-56 | D8R3X4_SELML; Uncharacterized protein WOX9-1 | ||||
STRING | EFJ33362 | 1e-56 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 3e-19 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | 84611 |
Entrez Gene | 9634645 |
Publications ? help Back to Top | |||
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