PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 84550
Common NameSELMODRAFT_84550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family STAT
Protein Properties Length: 629aa    MW: 70250.7 Da    PI: 6.597
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
84550genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT200.51.5e-622413631122
   STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfleavsk 103
            ldvvll+alg++++kd+e+vasL+yad+g++vek+ ddaeapLL+++dGvef+s++rp+kl++GrasfklkisqLsskcdnrLfr++fe+p++ k+pfl+++s+
  84550 241 LDVVLLDALGRAIHKDIELVASLVYADTGYLVEKPkDDAEAPLLTTFDGVEFPSTERPIKLVHGRASFKLKISQLSSKCDNRLFRVCFESPNIPKFPFLRVFSR 344
            8*********************************999******************************************************************* PP

   STAT 104 pirCisrsrntrsssltkk 122
            pirC+sr+rn+r+ s+ +k
  84550 345 PIRCVSRNRNSRTPSAPWK 363
            *************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF555501.75E-7558618IPR000980SH2 domain
Gene3DG3DSA:3.30.505.102.9E-5558618IPR000980SH2 domain
PROSITE profilePS5000111.161561618IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MAVKLSKAFA VFDNDEYLPL DDLQVTLTRE NTSEDGTYTL CLWMYLLKNN RHPGVIIRQV  60
SLLFSSHELK SVCAMFLCIQ STSSIQSLPF LSLDNDLRLV LHPLVQTESS ELDVLADQSC  120
PVEKWVHVGC EIGHNIARLH IDGVVTGEKA ISFPSCDETV EPVKLSGGDG QNRGGFVQAY  180
AHHVCVLPQP SVTNHYVKNP PLELSLDGST GGSEDHELEE GGDGVWSVVG GKASCRRNFA  240
LDVVLLDALG RAIHKDIELV ASLVYADTGY LVEKPKDDAE APLLTTFDGV EFPSTERPIK  300
LVHGRASFKL KISQLSSKCD NRLFRVCFES PNIPKFPFLR VFSRPIRCVS RNRNSRTPSA  360
PWKRSFAAVY PVDGTNLPSA AEDRPETLRA NESNGMAAPN SCGEKAFSDY MVFKYCLETI  420
HSRAAFLRAL VVSKTEEELH EFAGRVSQYT GCQHNGYQVL IAKKLLREGE DIWRQVSHDG  480
YSAPWPSLMS KLEESFYNIS GQSKRRFTSK DIEFIQQNCG TGNATTTREQ FDRLWQWLYP  540
VAMTVATPQV RKTWESVTPK WIEGMVSRKE AEELLRGVDG IPKTGSFILR FASSRSWPHP  600
DAGALVASYV TDDLRINHRL LNLDTRTW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024526642.10.0SH2 domain-containing protein A
RefseqXP_024526643.10.0SH2 domain-containing protein A
TrEMBLD8R3X90.0D8R3X9_SELML; Uncharacterized protein
STRINGEFJ333630.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.21e-138SH2 domain protein A
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]