PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 84280
Common NameSELMODRAFT_84280
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 197aa    MW: 22045.1 Da    PI: 10.3684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
84280genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E++l++ + +++G+g+W++I+r++  +Rt+ q+ s+ qky
            84280 115 PWSEDEHKLFLIGLEKYGKGDWRSISRKVVITRTPTQVASHAQKY 159
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.458108164IPR017930Myb domain
SuperFamilySSF466892.32E-15110164IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-16112162IPR006447Myb domain, plants
SMARTSM007172.9E-10112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-10113161IPR009057Homeodomain-like
CDDcd001674.63E-10115160No hitNo description
PfamPF002492.6E-12115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPEELRIAPP AWSAADIKLF ESALSVSAHK FGSGEPNWEK FHLPGKQGWE LKQQYDMLVK  60
DVAAIEAGLV APPNYIEAPP QGSPDRSGSP GRKIPASIVH RTSDHPPQER RKGIPWSEDE  120
HKLFLIGLEK YGKGDWRSIS RKVVITRTPT QVASHAQKYF NRLASKNKDK RRNSIHDITS  180
VSPPPLISPH HRPMHH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965488.11e-142transcription factor SRM1
SwissprotQ9FNN65e-50SRM1_ARATH; Transcription factor SRM1
TrEMBLD8R3941e-141D8R394_SELML; Uncharacterized protein
STRINGEFJ329081e-142(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-52MYB family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]