PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 81371 | ||||||||
Common Name | SELMODRAFT_128854, SELMODRAFT_81371, WRKY_23, WRKY_33 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WRKY | ||||||||
Protein Properties | Length: 62aa MW: 7075.12 Da PI: 9.0402 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.4 | 3.1e-33 | 1 | 60 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt++ gCpv+k+v+r+aed++++++tYeg+Hnh+ 81371 1 MNDGCQWRKYGQKMAKGNPCPRAYYRCTMSpGCPVRKQVQRCAEDTSILVTTYEGTHNHP 60 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 7.19E-29 | 1 | 62 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.539 | 1 | 62 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-38 | 1 | 61 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-32 | 2 | 61 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-29 | 2 | 60 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MNDGCQWRKY GQKMAKGNPC PRAYYRCTMS PGCPVRKQVQ RCAEDTSILV TTYEGTHNHP 60 LP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-25 | 1 | 62 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002964569.2 | 2e-40 | WRKY transcription factor 42 | ||||
Refseq | XP_002988828.2 | 1e-40 | WRKY transcription factor 42 | ||||
Swissprot | Q9C9F0 | 1e-38 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A078FE95 | 2e-37 | A0A078FE95_BRANA; BnaA02g13630D protein | ||||
TrEMBL | D8R033 | 7e-40 | D8R033_SELML; Uncharacterized protein WRKY_23 (Fragment) | ||||
STRING | EFJ10090 | 1e-40 | (Selaginella moellendorffii) | ||||
STRING | EFJ34902 | 1e-40 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 5e-41 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | 81371 |
Entrez Gene | 9653964 | 9661836 |
Publications ? help Back to Top | |||
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