PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 80895 | ||||||||
Common Name | SELMODRAFT_80895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25532.9 Da PI: 9.9503 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.7e-20 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd +++g +r++lg+f taeeAa a+++a+ k++g 80895 103 QYRGVRRRP-WGKFAAEIRDSTKQG--ARIWLGTFETAEEAAIAYDQAAFKMRG 153 69*******.**********55444..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 102 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-37 | 103 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.012 | 103 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-14 | 103 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-23 | 103 | 163 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.4E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.19E-24 | 111 | 161 | No hit | No description |
PRINTS | PR00367 | 4.4E-11 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MESPVAAAWQ PSPKLSPCWG SKRINTGIPN HLFFLNENDS EEMPLYGLLK EAATRHPFDS 60 APTKIEAIQD VKPEPPVAVA MAAAAAPPAA VAPVQPASQP RRQYRGVRRR PWGKFAAEIR 120 DSTKQGARIW LGTFETAEEA AIAYDQAAFK MRGRRALLNF PLRLATPAAA AAARAESSSP 180 ESSVTSAIES QKERTRKRAR DSSLSQSSSK RQAPLVVEIQ EPDVDYMEQL LSGL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-31 | 102 | 164 | 4 | 66 | ATERF1 |
3gcc_A | 3e-31 | 102 | 164 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002963990.2 | 1e-167 | ethylene-responsive transcription factor 2 | ||||
Swissprot | O80338 | 2e-42 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | D8QYY8 | 1e-167 | D8QYY8_SELML; Uncharacterized protein | ||||
STRING | EFJ34323 | 1e-168 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-21 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 80895 |
Entrez Gene | 9655580 |
Publications ? help Back to Top | |||
---|---|---|---|
|