PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 79699
Common NameSELMODRAFT_79699
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family SBP
Protein Properties Length: 87aa    MW: 10112.5 Da    PI: 9.2449
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
79699genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.5e-41885178
           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
    SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
           +C+v+gC +dls+a +yhrrhkvC+ h+  p+v+ +g+eqrfCqqCsrfh+lsefDe+krsCr+rLa+hnerrr++q+
  79699  8 CCRVDGCGEDLSTAGDYHRRHKVCKLHATLPKVMNHGQEQRFCQQCSRFHSLSEFDEGKRSCRKRLAGHNERRRRHQP 85
           6**************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33670IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.983683IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-37786IPR004333Transcription factor, SBP-box
PfamPF031102.5E-32982IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MPVLPVPCCR VDGCGEDLST AGDYHRRHKV CKLHATLPKV MNHGQEQRFC QQCSRFHSLS  60
EFDEGKRSCR KRLAGHNERR RRHQPDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-299821184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002963433.25e-57squamosa promoter-binding-like protein 15 isoform X1
RefseqXP_024524017.12e-57uncharacterized protein LOC9655427 isoform X2
RefseqXP_024524018.12e-57uncharacterized protein LOC9655427 isoform X3
SwissprotQ700C21e-32SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLD8QWW01e-57D8QWW0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ353042e-58(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.16e-35SBP family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]