PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 79393 | ||||||||
Common Name | MADS2-2, SELMODRAFT_451128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 7043.26 Da PI: 10.7083 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.9 | 4.8e-27 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien+ rqvt+skRrng++KKA+ELS+LCd++va+i+fs+ gkl 79393 9 KKIENHQARQVTYSKRRNGLMKKAFELSTLCDTDVALIMFSPAGKLS 55 78*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.282 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-26 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-25 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MGRVKLEIKK IENHQARQVT YSKRRNGLMK KAFELSTLCD TDVALIMFSP AGKLSIHPND 60 GR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM999807 | 1e-102 | Selaginella moellendorffii mRNA for MADS3 protein, allele 1 | |||
GenBank | FM999808 | 1e-102 | Selaginella moellendorffii mRNA for MADS3 protein, allele 2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024524066.1 | 3e-35 | MADS-box transcription factor 6 isoform X1 | ||||
Swissprot | Q9LM46 | 2e-22 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | D8QY82 | 8e-35 | D8QY82_SELML; MADS-domain transcription factor | ||||
TrEMBL | D8RTW9 | 3e-34 | D8RTW9_SELML; MADS-domain transcription factor | ||||
TrEMBL | H1ZSL9 | 4e-38 | H1ZSL9_9TRAC; MADS3 protein (Fragment) | ||||
STRING | EFJ24305 | 5e-35 | (Selaginella moellendorffii) | ||||
STRING | EFJ35566 | 1e-35 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 6e-25 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | 79393 |
Entrez Gene | 9637245 |
Publications ? help Back to Top | |||
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