PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

78396

Common Name

SELMODRAFT_78396, SELMODRAFT_79245

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 84aa MW: 10176.5 Da PI: 7.2536

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
78396	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	8.9e-10	35	76	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE +l++d ++++ ++ +++Ia+ ++ ++t +c+++++ 78396 35 PWTPEEKKLFLDKFALFYKN-FAKIASFLQ-HKTTGDCVEFYYR 76 8***************99.*****.*********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-15	20	82	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.257	31	82	IPR017884	SANT domain
SMART	SM00717	5.7E-9	32	80	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-7	34	76	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-6	34	79	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MILCQGERSA QYIVQSNRRV EDPIEFEQER KSINPWTPEE KKLFLDKFAL FYKNFAKIAS 60 FLQHKTTGDC VEFYYRNQKT EEFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024515239.1	5e-50	uncharacterized protein LOC112340639 isoform X1
Refseq	XP_024515243.1	5e-50	uncharacterized protein LOC112340639 isoform X2
Refseq	XP_024517706.1	5e-50	uncharacterized protein LOC9660995 isoform X1
Refseq	XP_024517711.1	4e-50	uncharacterized protein LOC9660995 isoform X2
TrEMBL	D8QU31	5e-56	D8QU31_SELML; Uncharacterized protein (Fragment)
STRING	EFJ35990	9e-57	(Selaginella moellendorffii)
STRING	EFJ36228	9e-57	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3215	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-24	MYB family protein

Link Out ? help Back to Top
Phytozome	78396
Entrez Gene	9661125 \| 9661764

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]