PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 78303 | ||||||||
Common Name | SELMODRAFT_38058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10368 Da PI: 10.7294 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 7e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+W +eEde+lv +++++G ++W++ +++ ++R++k+c++rw +yl 78303 14 KGPWQPEEDEKLVAYIRKHGHENWRALPEKAAgLNRCGKSCRLRWTNYL 62 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-25 | 8 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.469 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.3E-20 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.13E-10 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 66 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MGRPPRRNKE GLTKGPWQPE EDEKLVAYIR KHGHENWRAL PEKAAGLNRC GKSCRLRWTN 60 YLRPDIKRGG ITAQEEVLII WLHSILGNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-16 | 12 | 89 | 5 | 80 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024518613.1 | 2e-57 | transcription factor MYB106 | ||||
Refseq | XP_024541225.1 | 2e-57 | transcription factor MYB106 | ||||
Swissprot | Q9SBF3 | 9e-41 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | D8QVM2 | 2e-58 | D8QVM2_SELML; Uncharacterized protein | ||||
TrEMBL | D8SAB1 | 3e-58 | D8SAB1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ18723 | 5e-59 | (Selaginella moellendorffii) | ||||
STRING | EFJ36085 | 3e-59 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 4e-43 | myb domain protein 92 |
Link Out ? help Back to Top | |
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Phytozome | 78303 |
Entrez Gene | 9647726 |
Publications ? help Back to Top | |||
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