PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 77979 | ||||||||
Common Name | SELMODRAFT_129832, SELMODRAFT_77979, WRKY_12, WRKY_34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WRKY | ||||||||
Protein Properties | Length: 95aa MW: 10703.2 Da PI: 10.6664 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.7 | 2e-32 | 24 | 82 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ 77979 24 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPTMLIITYTSEHNHP 82 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 33.155 | 18 | 84 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.6E-33 | 21 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-28 | 22 | 84 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-37 | 23 | 83 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-27 | 25 | 82 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MQQKRIVCVP VAGGGKPTGE VLPSDMWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ 60 VERSRNDPTM LIITYTSEHN HPWPAHRNSL AGTTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-24 | 4 | 85 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-24 | 4 | 85 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024518793.1 | 8e-65 | probable WRKY transcription factor 14 isoform X2 | ||||
Swissprot | O64747 | 4e-49 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | D8QUP8 | 9e-65 | D8QUP8_SELML; Uncharacterized protein WRKY_12 (Fragment) | ||||
STRING | EFJ09535 | 2e-65 | (Selaginella moellendorffii) | ||||
STRING | EFJ36328 | 2e-65 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 2e-51 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | 77979 |
Entrez Gene | 9651072 | 9660814 |
Publications ? help Back to Top | |||
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