PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 77288 | ||||||||
Common Name | SELMODRAFT_77288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 19995.1 Da PI: 6.528 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.9e-13 | 4 | 47 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ErrRR+++N+++ +Lr+++Pk + K++ +iL A++Y+k+Lq 77288 4 MAERRRRKKLNDRLYTLRSIVPKiS------KMDRTSILGDAIDYLKELQ 47 79*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.872 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-16 | 3 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-15 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-13 | 4 | 51 | No hit | No description |
Pfam | PF00010 | 1.2E-10 | 4 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-16 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
KNLMAERRRR KKLNDRLYTL RSIVPKISKM DRTSILGDAI DYLKELQQRI ETVYTDLQSP 60 VMSFASKQKL LFEEELQTSV TFPMECWEPQ VDVQTSGANA ISIHMFCEQR PGLLLSTMRA 120 LDGLGVDVQE ADIKFTNGFQ LEIYAEQSTK KLASPEEIKA VLMHTAGYFN PVMPC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024525281.1 | 1e-118 | transcription factor SCREAM2 | ||||
Refseq | XP_024535551.1 | 1e-118 | transcription factor SCREAM2 | ||||
Refseq | XP_024535552.1 | 1e-118 | transcription factor SCREAM2 | ||||
Swissprot | Q9LPW3 | 7e-56 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | D8QSQ4 | 1e-128 | D8QSQ4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ36982 | 1e-129 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 3e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 77288 |
Entrez Gene | 9663228 |