PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 7686 | ||||||||
Common Name | SELMODRAFT_414867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NF-YC | ||||||||
Protein Properties | Length: 78aa MW: 8682.17 Da PI: 8.2215 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.1 | 8.4e-18 | 1 | 75 | 24 | 98 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++ade+v +i+ +Pvl+ska elf+ +l +++ + +t+ s ++++v+ +fdfl +iv + 7686 1 ARIKKIMQADEEVGKIALATPVLISKALELFLQDLCDKTYEITLGRGAKTMSSSHLKQCVQTNSVFDFLREIVSK 75 7**********************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 7.2E-17 | 1 | 60 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.2E-24 | 1 | 74 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.13E-20 | 7 | 77 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
ARIKKIMQAD EEVGKIALAT PVLISKALEL FLQDLCDKTY EITLGRGAKT MSSSHLKQCV 60 QTNSVFDFLR EIVSKVPD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-23 | 1 | 61 | 15 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002963680.2 | 1e-49 | dr1-associated corepressor | ||||
Refseq | XP_002974769.1 | 1e-49 | dr1-associated corepressor isoform X1 | ||||
Swissprot | Q14919 | 3e-28 | NC2A_HUMAN; Dr1-associated corepressor | ||||
Swissprot | Q2YDP3 | 3e-28 | NC2A_BOVIN; Dr1-associated corepressor | ||||
TrEMBL | D8QY56 | 6e-50 | D8QY56_SELML; Uncharacterized protein (Fragment) | ||||
TrEMBL | D8RUW5 | 3e-48 | D8RUW5_SELML; Uncharacterized protein | ||||
STRING | EFJ24289 | 5e-49 | (Selaginella moellendorffii) | ||||
STRING | EFJ35551 | 1e-50 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-42 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | 7686 |
Entrez Gene | 9636702 |
Publications ? help Back to Top | |||
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