PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 75886 | ||||||||
Common Name | SELMODRAFT_75886, SELMODRAFT_86553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 214aa MW: 22500.4 Da PI: 8.2854 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3e-06 | 13 | 36 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt++C f+ t C+yG+ C+F H 75886 13 KTKPCTKFFSTSGCPYGEGCHFLH 36 9*********************** PP | |||||||
2 | zf-CCCH | 27.7 | 4.6e-09 | 180 | 204 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +++ GtC + +rC+FaHg 75886 180 FKTKLCENYSS-GTCTFAERCHFAHG 204 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.465 | 11 | 39 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-7 | 11 | 37 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.63 | 11 | 38 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-9 | 13 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.16E-16 | 87 | 167 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.9E-13 | 93 | 163 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.284 | 94 | 158 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.2E-16 | 95 | 163 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 9.99E-16 | 96 | 158 | No hit | No description |
Pfam | PF00013 | 1.6E-12 | 97 | 159 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-15 | 177 | 210 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.02E-8 | 178 | 210 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 179 | 205 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-6 | 180 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
RDLTQQTSAL GSKTKPCTKF FSTSGCPYGE GCHFLHYVPG GINSLQNGAT AGIGGAAALI 60 NGTTVFSSNP VATSVYYGEP TPPGVPAATT FGSISVTRMS IEAAYAGAII GKAGANVKQI 120 SKVTGCKVSI RDHETDPNMR NVEMEGSLEQ IESASEMVRQ LLQTREVAPP RGPALGSHNF 180 KTKLCENYSS GTCTFAERCH FAHGTQELRP IIR* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024527485.1 | 1e-115 | zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_024536114.1 | 1e-115 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9C7C3 | 2e-58 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | D8QND8 | 1e-156 | D8QND8_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ31404 | 1e-157 | (Selaginella moellendorffii) | ||||
STRING | EFJ38744 | 1e-157 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-50 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 75886 |
Entrez Gene | 9636111 | 9642287 |
Publications ? help Back to Top | |||
---|---|---|---|
|