PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 75102 | ||||||||
Common Name | SELMODRAFT_75102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | CPP | ||||||||
Protein Properties | Length: 156aa MW: 16710.3 Da PI: 8.3731 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.7 | 3e-15 | 1 | 38 | 5 | 42 |
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +C+CkkskClk+YCeCfa+g++C ++C C +C+N++e+ 75102 1 RCSCKKSKCLKLYCECFASGSYCLDSCACGNCSNRQEH 38 5*********************************9986 PP | |||||||
2 | TCR | 53.3 | 5.4e-17 | 96 | 135 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k+k+gCnCkks ClkkYCeCf++++ Cs+ CkC +CkN+ 75102 96 KHKRGCNCKKSLCLKKYCECFQSEVGCSDACKCRGCKNTF 135 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 33.948 | 1 | 136 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.3E-11 | 1 | 35 | IPR005172 | CRC domain |
SMART | SM01114 | 3.7E-10 | 1 | 38 | IPR033467 | Tesmin/TSO1-like CXC domain |
SMART | SM01114 | 2.3E-17 | 96 | 137 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.2E-13 | 98 | 134 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
RCSCKKSKCL KLYCECFASG SYCLDSCACG NCSNRQEHED VVSETRQLIQ SRNPLAFAPR 60 VISPAEVVRV CQAFVSSNSL IFVSPAAAAI PAATSKHKRG CNCKKSLCLK KYCECFQSEV 120 GCSDACKCRG CKNTFGAKQG DDFFVVCIAT VNAGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-17 | 2 | 133 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-17 | 2 | 133 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024525711.1 | 9e-73 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
Refseq | XP_024544815.1 | 9e-73 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
Swissprot | Q8L548 | 4e-47 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | D8QPD3 | 1e-107 | D8QPD3_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ37600 | 1e-107 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 3e-37 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 75102 |
Entrez Gene | 9633246 |
Publications ? help Back to Top | |||
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