PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 74950 | ||||||||
Common Name | SELMODRAFT_402243, VND2-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 19451.1 Da PI: 9.8749 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.9 | 3.3e-56 | 13 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+e+d+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+++++ ++l+g 74950 13 VPPGFRFHPTDEELVGYYLAKKVAASKIDL-DVIREIDLYKLEPWDLQErcRIGSaEQHEWYFFSHKDKKYPTGTRTNRATGAGFWKATGRDKPIFARVSKLIG 115 69****************************.9***************953544443666********************************************* PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 ++ktLvfykgrap+g+k+dW+mheyrle 74950 116 MRKTLVFYKGRAPNGQKSDWIMHEYRLE 143 **************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-61 | 9 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.801 | 13 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-29 | 14 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSSSIQLSGT SSVPPGFRFH PTDEELVGYY LAKKVAASKI DLDVIREIDL YKLEPWDLQE 60 RCRIGSAEQH EWYFFSHKDK KYPTGTRTNR ATGAGFWKAT GRDKPIFARV SKLIGMRKTL 120 VFYKGRAPNG QKSDWIMHEY RLEDDINNTA TNEEGWVVCR VFRKRNVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-56 | 12 | 166 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024530051.1 | 1e-123 | NAC domain-containing protein 105 | ||||
Swissprot | Q9SL41 | 7e-91 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | D8QQ16 | 1e-121 | D8QQ16_SELML; Uncharacterized protein VND2-1 | ||||
TrEMBL | D8R8W2 | 1e-121 | D8R8W2_SELML; Uncharacterized protein VND2-2 | ||||
STRING | EFJ32131 | 1e-122 | (Selaginella moellendorffii) | ||||
STRING | EFJ37712 | 1e-121 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 6e-83 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | 74950 |
Entrez Gene | 9663153 |
Publications ? help Back to Top | |||
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